That makes perfect sense to have a safe, limited cleaner. As I mentioned, one of the areas that ARO evaluates (and in my case, the majority of the errors were found) was in the deep scan where 830 errors pertained to invalid/orphaned reference/pathways. There were 151 errors in software where pgms in the Control Panel were no longer installed.
Since there is a detailed, line by line listing of all the errors detected, one can choose which ones to correct or ignore.