1. log files by their very nature just log events. if you want to see the history of an event, then Yes, keep your log files. all I can say is that in 30 years of professionally using PC's I have needed to look at a log file maybe 3 times. so, don't run CC if you are troubleshooting.
2. I've stayed on v5.40 so don'y know about that new feature - sounds wanky to me.
3. you run the potential to restore a 'broken' registry if the restore point has a snapshot of such a registry. cleaning the registry is always potentially unsafe not matyter how small and simply not needed these days except in removing gremlins.
4. it is msconfig, with a bit of
%appdata%\Microsoft\Windows\Start Menu\Programs\Startup and
%programdata%\Microsoft\Windows\Start Menu\Programs\Startup and
for 32bit
HKLM:\Software\Wow6432Node\Microsoft\Windows\CurrentVersion\Run
HKLM:\Software\Wow6432Node\Microsoft\Windows\CurrentVersion\RunOnce
and for 64bit
HKLM:\Software\Microsoft\Windows\CurrentVersion\Run,
HKLM:\Software\Microsoft\Windows\CurrentVersion\RunOnce, HKCU:\Software\Microsoft\Window\CurrentVersion\Run,
HKCU:\Software\Microsoft\Windows\CurrentVersion\RunOnce
5. all depends if you want to keep what the cookies are saving
6. I've never had those options ticked. again, it's all down to personal preferences - do you what to delete everything or just everything but the last 24 hours?
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2. In the same menu but in Applications > Windows there is an option for running CCleaner on RegEdit. What does this actually do?
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Applications > Windows > RegEdit
All that does is delete the MRU ("Recent Location") in RegEdit where you were last viewing a key. It doesn't harm anything.