How to prevent CCleaner from emptying start menu shortcuts?

Hello.

I'm using the latest version of CCleaner.

Whenever I run the cleaner, it empties the "most frequent programs" from the start menu.

I've disabled the option "start menu shortcuts", and yet it deletes the most used programs from the start menu.

What can I do?

I'm using Windows 7 if it matters...

Thanks in advance.