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I have created a 'TEMP' folder within 'Downloads' for downloads and all browsers are set to download to this location.
I then move the downloads I want to save to their respective location and I have set CCleaner to clear this TEMP folder (pic att).
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<a class="ipsAttachLink ipsAttachLink_image" data-fileid="11370" href="<fileStore.core_Attachment>/monthly_2018_11/CCleaner.JPG.ed97cbf34848010af5678dab96ca7a97.JPG" rel="" data-fileext="JPG"><img alt="CCleaner.thumb.JPG.8bc1a7bb54d67d2d5a3ce07615e8cbfe.JPG" class="ipsImage ipsImage_thumbnailed" data-fileid="11370" src="<fileStore.core_Attachment>/monthly_2018_11/CCleaner.thumb.JPG.8bc1a7bb54d67d2d5a3ce07615e8cbfe.JPG"></a>
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Edit: I have checked the Adavnced settings and noticed that the box for 'Custom Files and Folders' is no longer ticked.
Considering that I run CCleaner from the taskbar and do not open the program itself, I cannot explain how the box would become unticked.
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go to the include tab and edit the directory, make sure u have include files and subfolder selected ccleaner defaults to files only